split_otu_table.py – Split in a single OTU table into one OTU table per value in a specified field of the mapping file.¶
Description:
Usage: split_otu_table.py [options]
Input Arguments:
Note
[REQUIRED]
- -i, --otu_table_fp
- The input otu table
- -m, --mapping_fp
- The mapping file path
- -f, --mapping_field
- Mapping column to split otu table on
- -o, --output_dir
- The output directory
Output:
Split otu_table.biom into per-study OTU tables, and store the results in ./per_study_otu_tables/
split_otu_table.py -i otu_table.biom -m Fasting_Map.txt -f Treatment -o per_study_otu_tables