Raptor 3.0.1
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
build_parsing.cpp File Reference

Implements raptor::build_parsing. More...

#include <cereal/archives/json.hpp>
#include <chopper/configuration.hpp>
#include <chopper/prefixes.hpp>
#include <raptor/argument_parsing/build_parsing.hpp>
#include <raptor/argument_parsing/compute_bin_size.hpp>
#include <raptor/argument_parsing/init_shared_meta.hpp>
#include <raptor/argument_parsing/parse_bin_path.hpp>
#include <raptor/argument_parsing/shared.hpp>
#include <raptor/argument_parsing/validators.hpp>
#include <raptor/build/raptor_build.hpp>

Functions

void raptor::build_parsing (sharg::parser &parser)
 
void raptor::init_build_parser (sharg::parser &parser, build_arguments &arguments)
 
bool raptor::input_is_pack_file (std::filesystem::path const &path)
 
void raptor::parse_chopper_config (sharg::parser &parser, build_arguments &arguments)
 
void raptor::parse_shape_from_minimiser (sharg::parser &parser, build_arguments &arguments)
 
bool raptor::read_chopper_config (chopper::configuration &config, std::filesystem::path const &config_file)
 

Detailed Description

Implements raptor::build_parsing.

Author
Enrico Seiler <enrico.seiler AT fu-berlin.de>